PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5362_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 1830aa    MW: 201050 Da    PI: 7.827
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5362_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.3e-11176217931748
                                           HHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding   17 kqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48  
                                           kq+G+g +Wk+Ia++m+ gR++ qc  rwqk+l
  cra_locus_5362_iso_4_len_5865_ver_3 1762 KQFGNGrNWKKIAEYMP-GRSDVQCLQRWQKVL 1793
                                           6999999**********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF150449.9E-849120IPR028275Clustered mitochondria protein, N-terminal
PfamPF128076.2E-25726867IPR033646CLU central domain
CDDcd154662.84E-40728868IPR033646CLU central domain
Gene3DG3DSA:1.25.40.101.6E-208971112IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484524.43E-139031007IPR011990Tetratricopeptide-like helical domain
PfamPF134245.9E-139371007No hitNo description
SMARTSM000280.079938971IPR019734Tetratricopeptide repeat
PROSITE profilePS500058.85938971IPR019734Tetratricopeptide repeat
PROSITE profilePS5029311.9229381055IPR013026Tetratricopeptide repeat-containing domain
SuperFamilySSF484524.69E-119751099IPR011990Tetratricopeptide-like helical domain
SMARTSM000282509801013IPR019734Tetratricopeptide repeat
PROSITE profilePS500055.99801013IPR019734Tetratricopeptide repeat
PfamPF134241.1E-1010211095No hitNo description
SMARTSM000283110221055IPR019734Tetratricopeptide repeat
PROSITE profilePS500056.34310221055IPR019734Tetratricopeptide repeat
SuperFamilySSF466894.79E-917431796IPR009057Homeodomain-like
SMARTSM007176.5E-617431795IPR001005SANT/Myb domain
PROSITE profilePS512949.69117571797IPR017930Myb domain
CDDcd001673.77E-717621793No hitNo description
Gene3DG3DSA:1.10.10.604.6E-917621796IPR009057Homeodomain-like
PfamPF002491.1E-817621793IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1830 aa     Download sequence    Send to blast
MAPKSGRGKG NKAKASDKKK KEEKVVPSVL DITVITPYET QVILKGISTD KILDVKKLIA  60
ANVETCHLTN YSLSHEVKGQ KLNDKMEVVT LKPCLLRMVE EDYSEGSQAV AHVRRILDIV  120
ACTTRFGKSK GGSGRANAAA YSAASPSPTA ASAGAESRAK KNNKAQSSSR PSSPINGEVR  180
APGTPAPPVA EGYDMVAIHP IPKLSDFYEF FNFSHLTPPI LSLKRMNRKD GENGREGDHF  240
EMQIKICNGK LIQVVASTKG FYTTGKQFLQ SHSLVDLLQQ LSQAFANAYD SLMKAFMEHN  300
KFGNLPYGFR ANTWLVPPSV SDTASDFVPL PTEDENWGGN GGGQGRHGEY DLRPWASDFA  360
ILASLPCKTE EERVVRDRKA FLLHNLFVEV STLKAVSAIG EVMDSIAKGQ SPLGSVMHED  420
RLGDLFITVK RDDADASLKT AVKTIGSRTS DESSTEVAQR NLLKGVIADE SVVVHDTSSL  480
GVVVVRHCGY TATVKVVGDV KKQKNLRQDI EINDQPEGGA NALNINSLRI LLHKSFTSEA  540
SGEGQSPNSN YINLEKSHIL VQKVVRDSLD KLSKEDIPDR SIRWELGSCW VQHLQKQETP  600
AENSSKMSGG DKKSEPVVKG LGKKFKMLKN RERKPNSSSC VDDNVENNSK VSSTNDESTA  660
AELHNAESES ETELRKIIPK EAYLRLRETG TGLHTKSVNE LVQLAHKYYD EVALPKLVTD  720
FASLELSPVD GRTLTDFMHL RGLQMRSLGR VVELAEKLPH IQSLCIHEMI TRAFKHILKA  780
VIASVDSKAD LPAAIAASLN FLLGSCIIGD NQKYSDVQIL NLEWLRTFLE KRFCWKLNDE  840
FPKLRKLSIL RGLCHKVGLE LAPRDYDMGS PDPFRPSDII SLVPVCKHVG CSSADGRNLL  900
ESSKIALDKG KLEDAVNYGT KALAKMIAVC GPYHRTTASA YSLLAVVLYH TGDFNQATIY  960
QQKALDINER ELGLDHPDTM KSYGDLSVFY YRLQHIELAL KYVNRALFLL HFTCGLSHPN  1020
TAATYINVAM MEEGMGNVHV ALRYLHEALK CNQRLLGADH IQTAASYHAI AIALSLMEAY  1080
SLSVQHEQTT LQILQAKLGL DDLRTQDAAA WLEYFESKAL EQQEAARNGT PKPDASIASK  1140
GHLSVSDLLD YISPDQDSRA IDAQRKRRAK VMPVADKSQQ GQQAEGSNES TTGNETDITV  1200
SKLESNRVET KVENVSVEEP MRKNSSIKDP PVIEEASLEV SSDEGWQEAN SKGRSGSGAG  1260
RKFNRRRPNL AKIKVNSEFN SLGDRNYGKE VTPQGHKAMP KTVSLQVSLQ KHSKAAGMGT  1320
VEDLGKLPTK ALDPRVSPTS ISKVSSGSTT LTAIASKSLS YKDVAVAAPG TVLKPLLEKV  1380
EELKEAKTDT PFSTSTLETS ENEIESVAVD DRSPDHEDTG RVDAGEVHES DTKEDNSSPE  1440
FEDDSSSPND QEKCAETNGS KLSASAQPFS PGAYPLIHPI NSVAPTSVYD VIASQGMLTE  1500
PVSFPSVAAR VPCGPRSPMY YRGNHTFRMK HGFLNYQFPV SEQSAFPSAR IMNPHAPEFV  1560
PRRAWQPNTT TEGSRIATSD SSVDSNPSDP EVSSDEKHDK KDMLEVKGDR PKKSSSDAEK  1620
AELARQILLS FIVKSVKHSS DTPNESPVSE KKPDQFTGNS AEAVANDSAI IKILYGNEGK  1680
TEMVSEAKQN KQTKDADAND GEGFVVVTKR RRNRQHFANG IGLYNQQSIC ASVRXTNWTM  1740
RRACSKFSPD SDMKMDGKTS KKQFGNGRNW KKIAEYMPGR SDVQCLQRWQ KVLNPTPALN  1800
LHHPPILASG ISNSPQAIRR HQEKTGHIQP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073390.10.0PREDICTED: clustered mitochondria protein
SwissprotF4JKH60.0TSS_ARATH; Protein TSS
TrEMBLA0A068TQB70.0A0A068TQB7_COFCA; Uncharacterized protein
STRINGVIT_09s0002g07530.t010.0(Vitis vinifera)